cnv calling R package [cn.mops] 설치하기

 

https://bioconductor.org/packages/release/bioc/html/cn.mops.html

cn.mops

프로그램이 요구하는 R 버전과 required 패키지들을 갖춘 뒤 (없어도 cn.mops 설치하면서 같이 설치 됨 ! )

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cn.mops")

저기서 하라는대로 ..! BiocManager 설치 후 BiocManager 통해서 다운로드 받으면 손쉽게 ..! 받을 수 있다. 

install.packages("cn.mops") 도 해 봤는데 왜인지 R 버전 오류를 띄우더라고요. (R-4.1 기준)

 

설치가 잘 되었나 확인 해 보니 잘 되었다!

> library("cn.mops")
Loading required package: parallel
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames,
    dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
    rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    expand.grid, I, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb

Attaching package: ‘cn.mops’

The following object is masked from ‘package:S4Vectors’:

    params